Chinese Herbal Plant Genome Database

Transcriptomes

Species	Family	Genus	Sequencing platform
Dryopteris fragrans	Dryopteridaceae	Dryopteris	Illumina HiSeq X Ten
Drynaria roosii	Polypodiaceae	Drynaria	PacBio RS II, Illumina HiSeq 4000
Dioscorea zingiberensis	Dioscoreaceae	Dioscorea	Illumina Hiseq 2000
Dioscorea opposita	Dioscoreaceae	Dioscorea	Illumina Hiseq 2000
Digitalis ferruginea subsp. schischkinii	Plantaginaceae	Digitalis	Illumina HiSeq 4000
Dendrobium officinale	Orchidaceae	Dendrobium	Illumina HiSeq 2000
Dendrobium officinale	Orchidaceae	Dendrobium	Illumina Hiseq 4000
Dendrobium officinale	Orchidaceae	Dendrobium	Illumina Hiseq 2500
Dendrobium moniliforme	Orchidaceae	Dendrobium	Illumina Hiseq 4000
Dendrobium huoshanense	Orchidaceae	Dendrobium	Illumina HiSeq 2500
Dendrobium huoshanense	Orchidaceae	Dendrobium	Illumina Hiseq 2000
Dactylicapnos scandens	Papaveraceae	Dactylicapnos	Illumina HiSeq 2000
Cyclocarya paliurus	Juglandaceae	Cyclocarya	Illumina HiSeq 2000
Cyclocarya paliurus	Juglandaceae	Cyclocarya	HiSeq XTen
Curcuma wenyujin	Zingiberaceae	Curcuma	Illumina

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Ardisia crenata

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.blast.protein.fa

Ardisia japonica

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.blast.protein.fa

Ardisia pusilla

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.blast.protein.fa

Ardisia quinquegona

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.blast.protein.fa

Balanophora involucrata

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.blast.protein.fa

Bergenia purpurascens

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.protein.fa

Centranthera grandiflora

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.protein.fa

Coptis teeta

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.blast.protein.fa

Curculigo orchioides

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.blast.protein.fa

Cyclocarya paliurus

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.pep.fas

Desmodium concinnum

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.protein.fa

Dipsacus asperoides

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.protein.fa

Erigeron breviscapus

hormone:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLength.fasta

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLengthgene.blast.cds.fasta

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLengthgene.blast.pep.fasta

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.blast.protein.fa

Fibraurea recisa

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.blast.protein.fa

Gelsemium elegans

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.blast.protein.fa

Gentiana rigescens

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.blast.protein.fa

Flower:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.protein.fa

Gynostemma longipes

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/GlUnigene.blast.protein.fa

Gynostemma pentaphyllum

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene-JDA.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene.blast.protein.fa

Hemsleya chinensis

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.blast.protein.fa

Marsdenia tenacissima

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.blast.protein.fa

Neoalsomitra integrifoliola

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.pep.fas

Panax notoginseng

L:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.blast.protein.fa

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.blast.protein.fa

Panax vietnamensis

Root:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.blast.protein.fa

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.pep.fas

Paris polyphylla var. yunnanensis

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/mRNA.fasta

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/predict.cds.fasta

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/predict.pep.fasta